PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7325.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 355aa    MW: 39534.5 Da    PI: 8.9677
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7325.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-171170155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  MLOC_7325.1 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 70
                 57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-171180IPR016177DNA-binding domain
PfamPF008471.1E-121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-161279IPR001471AP2/ERF domain
SMARTSM003801.2E-241284IPR001471AP2/ERF domain
PROSITE profilePS5103219.8361278IPR001471AP2/ERF domain
PRINTSPR003673.3E-51324IPR001471AP2/ERF domain
PRINTSPR003673.3E-56080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  60
YDLAALKYWG AGTQINFPVS DYTRDLEEMQ MISKEDYLVS LRRKSSAFSR GLPKYRGLPR  120
QLHNSRWDAS LGQLLGNDYM NLSCGKGIAL DGKFAGSFGL ERKIDLTNYI RWWVPKKARQ  180
SDTSKAEEVA DEIRAIEGSV QLTEPYKLPS LGLGSHSKPS SAGLSACGIL SQSGAFKSFL  240
EKSTKLSEEC TFSKEIDEGK VAVSEPTTGH HTSAVDINMN GLLVQRAPYT LAPVMPTMKS  300
TWSPSDPSAD HLFWSNFILP SSQPVTMATI TTTTFAKNEV SSSDPFKNQE YEHTK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3557490.0AK355749.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1025C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196301.10.0AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_020196302.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK22e-93AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A287FQP10.0A0A287FQP1_HORVV; Uncharacterized protein
TrEMBLF2CVU60.0F2CVU6_HORVV; Predicted protein
STRINGMLOC_7325.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-89AP2 family protein