PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73347.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 349aa    MW: 37100.6 Da    PI: 7.3034
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73347.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17e-32158211255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt++LH rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MLOC_73347.2 158 PRMRWTSTLHCRFVHAVELLGGHDRATPKSVLELMDVKDLTLSHVKSHLQMYRT 211
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-28155212IPR009057Homeodomain-like
SuperFamilySSF466892.15E-15156212IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-24158211IPR006447Myb domain, plants
PfamPF002493.8E-6159210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPASA TPHGHDHHRA MSGRFFGPPT PSSSNIGGNP AMAASLPLPF  60
PMTPMPLPPQ HAAAPGHGGL YYHHHAVPDG RMLQPIRGVP LYPTPFPPPP PHGGPSAAAT  120
APCYCDPCHV AGAWRRGVGG CGGRLLGFPA PKRAARAPRM RWTSTLHCRF VHAVELLGGH  180
DRATPKSVLE LMDVKDLTLS HVKSHLQMYR TVKNTERPAA SSDQADGFEN GSAGEICDDN  240
LLDLRGGGRP EAVAAATRNG RLAASDDDRS IGAGATHGGA LWNSSSRDED WSGFPCDSNN  300
ESMQSFKDHM QSKSLEILSD MNSCLSETTS SASAPNLDFT LGRPHQCRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16159213357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16159213357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16159213357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16159213357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73347.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956895e-82FP095689.1 Phyllostachys edulis cDNA clone: bphylf026d19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178603.10.0probable transcription factor KAN2
TrEMBLA0A3B6RFV80.0A0A3B6RFV8_WHEAT; Uncharacterized protein
TrEMBLA0A446XHK60.0A0A446XHK6_TRITD; Uncharacterized protein
STRINGMLOC_73347.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-38G2-like family protein