PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73358.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 232aa    MW: 23919.7 Da    PI: 8.9966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73358.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.8e-213788156
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  MLOC_73358.1 37 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGN 88
                  68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-153793No hitNo description
PfamPF008477.1E-153787IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-233896IPR016177DNA-binding domain
PROSITE profilePS5103224.2633895IPR001471AP2/ERF domain
SMARTSM003802.1E-3538101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-323895IPR001471AP2/ERF domain
PRINTSPR003673.1E-113950IPR001471AP2/ERF domain
PRINTSPR003673.1E-116177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPRTSDKTA TPPAAAVAAT GLALGVGGGA NGGGVGPHYR GVRKRPWGRY AAEIRDPAKK  60
SRVWLGTYDT AEEAARAYDA AAREYRGNKA KTNFPFASAP PAAALTGDGS RSSNSSTVDS  120
FGGDVQAPMQ AMPLPPSVEL DLFHRAASTA GAGMRFPFSG YPVSHPYYFF GQAAAAAAAG  180
CHMYNLAPKV TVASVSPSDS DSSSIVDLAP SPPARKPVPF DLDLNCPPPA EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-223696364ATERF1
3gcc_A5e-223696364ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703560.0AK370356.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193348.12e-94ethylene-responsive transcription factor 8-like
TrEMBLF2E2I51e-164F2E2I5_HORVV; Predicted protein
STRINGMLOC_73358.11e-166(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.18e-18ethylene response factor 8