PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_73706.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 189aa MW: 21061.2 Da PI: 9.0249

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_73706.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.7e-06	28	77	5	32
HHHHHHHHHHHHHHHHHHHHCTSCC.C....................... CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.....................k 32 ++e E+ RR+r++ e+L +l+P + k MLOC_73706.3 28 KKESEKERRKRMKALCEKLASLIPReHCcsttdtmtqlgsldvgasyikK 77 6899********************96555444444444444444444430 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.55	23	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-11	28	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-8	29	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MEPVKAKPAR GGKRSRESGG TAVVLLEKKE SEKERRKRMK ALCEKLASLI PREHCCSTTD 60 TMTQLGSLDV GASYIKKLKE RVDELQRRMT SAQTLDTLRG DTSIPTPTTT TTTKSVVGSL 120 EEEKAREASA PVLQVRQHDD SSMEVRLICC MKRPIKLHEV ITIHEEEGAE IINANHSVAG 180 QKMFYTIHS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_73706.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248746	0.0	AK248746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7p01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177071.1	1e-105	uncharacterized protein LOC109762608
TrEMBL	A0A287Q0Q8	1e-134	A0A287Q0Q8_HORVV; Uncharacterized protein
TrEMBL	A0A287Q0R3	1e-135	A0A287Q0R3_HORVV; Uncharacterized protein
STRING	MLOC_73706.1	1e-136	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-07	bHLH family protein