PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73862.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 235aa    MW: 24253.7 Da    PI: 5.7249
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73862.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.2e-094362254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                  +ryps  ++  LA+++gL+ +qV++WF N R +
  MLOC_73862.2  4 SRYPSDVDKHILARQTGLSRSQVSNWFINARVR 36
                  69*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.402140IPR001356Homeobox domain
SuperFamilySSF466891.33E-12447IPR009057Homeodomain-like
CDDcd000866.50E-10441No hitNo description
Gene3DG3DSA:1.10.10.602.0E-17546IPR009057Homeodomain-like
PfamPF059201.1E-12636IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MFSSRYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYAEEM KDKEEGSGGD  60
GGGQPALQAG DLANPSPAAA GSYASEGRGE QKPTRAQLHQ LHDAGSLASV VSIGQSADPQ  120
GLNFGMMDQL DFDAYEAATA GFGNGVSLTL GLQHQQQQHH GGVNVAAFAA ASPSSSSAAH  180
GGAGAAEFVF MAGEGVHPSA NGQFGAGMGS GADVPSQYHR GLGVGGFHLL RDLAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73862.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584090.0AK358409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1076A02.
GenBankAK3591120.0AK359112.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160993.11e-118homeobox protein BEL1 homolog
TrEMBLM0YWS51e-168M0YWS5_HORVV; Uncharacterized protein
STRINGMLOC_73862.21e-168(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4933922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-25TALE family protein