PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74170.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 244aa    MW: 26056.4 Da    PI: 6.1478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74170.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-1064125454
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
                   ++  rE+ RR+++N++f eL +++ +              ++s Kl+Ka+iL  A++ + +L
  MLOC_74170.1  64 SKACREKMRREKLNDRFLELCSVMNSgKHggldecsasnPGKSAKLDKASILSDATRMLTQL 125
                   6789**********************666****************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.43360125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1162142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-763130No hitNo description
PfamPF000104.4E-864125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1265147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-766131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGGDPVEEF LLVGGGAGDG GDGLAAFCDG GLGIEDVSGG DSGLGQSNLG KRGRDEQSSS  60
GPKSKACREK MRREKLNDRF LELCSVMNSG KHGGLDECSA SNPGKSAKLD KASILSDATR  120
MLTQLRGETE KLKESNANLR ETIKDLKVEK NELRDEKLSL KAEKERLEQQ IKAASAAPVG  180
FAPHMPYPAA FHPAVFPQFA PPYQVPANKG APVPAAFPGM AMWHWLPPTA MDTTQDPKLW  240
PPNA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158150.11e-151transcription factor ILR3-like
TrEMBLF2DZ521e-153F2DZ52_HORVV; Predicted protein
STRINGMLOC_74170.11e-179(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-53bHLH family protein