PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74170.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 174aa    MW: 19245.1 Da    PI: 9.1668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74170.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.7e-082551254
                  HHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
           HLH 12 RRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54
                  RR+++N++f eL +++ +              ++s Kl+Ka+iL  A++ + +L
  MLOC_74170.2  2 RREKLNDRFLELCSVMNSgKHggldecsasnPGKSAKLDKASILSDATRMLTQL 55
                  ******************666****************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.877155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-10277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-4260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRREKLNDRF LELCSVMNSG KHGGLDECSA SNPGKSAKLD KASILSDATR MLTQLRGETE  60
KLKESNANLR ETIKDLKVEK NELRDEKLSL KAEKERLEQQ IKAASAAPVG FAPHMPYPAA  120
FHPAVFPQFA PPYQVPANKG APVPAAFPGM AMWHWLPPTA MDTTQDPKLW PPNA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158150.11e-111transcription factor ILR3-like
TrEMBLF2DZ521e-123F2DZ52_HORVV; Predicted protein
STRINGMLOC_74170.11e-126(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-46bHLH family protein