PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74313.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 147aa MW: 16752 Da PI: 8.114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74313.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.7	2.9e-16	3	108	18	90
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkaklkvkkekdgkwevtk 80 +s+k ++ge +k++fvC+k k++ ++ t+k++++ ++ +tgCkak++vk+ dg+wev++ MLOC_74313.1 3 TSRKAAKTGELIKQQFVCNKFRKPKVDDGGaenismldeivdetknddqdedivfldddsktkkTTKKQKRDTVLQTGCKAKMVVKLI-DGRWEVIH 98 57788999**********999999888899*************************99888888888999*********.**** PP FAR1 81 leleHnHela 90 ++ eHnH+l+ MLOC_74313.1 99 FVGEHNHPLV 108 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-14	3	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MNTSRKAAKT GELIKQQFVC NKFRKPKVDD GGAENISMLD EIVDETKNDD QDEDIVFLDD 60 DSKTKKTTKK QKRDTVLQTG CKAKMVVKLI DGRWEVIHFV GEHNHPLVDK PSLTKYLRSH 120 QGIPAEERAF LTHLHNCNLT TGLNQHP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74313.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168640.1	1e-51	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020194049.1	3e-53	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M0YY55	1e-105	M0YY55_HORVV; Uncharacterized protein
STRING	MLOC_74313.1	1e-106	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-06	FAR1-related sequence 4