PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74606.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WRKY

Protein Properties

Length: 313aa MW: 32940.4 Da PI: 8.1298

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74606.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	66.6	4e-21	86	146	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK ++ ++prsYYrC+++ gC+++++v+ s+++p+ i Y g+H+++ MLOC_74606.1 86 NDGKTWRKYGQKCIHACTNPRSYYRCSHKpdqGCQATRQVQESDSNPSEYLISYYGQHTCK 146 89************************9999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-23	71	148	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-22	78	148	IPR003657	WRKY domain
PROSITE profile	PS50811	20.794	80	148	IPR003657	WRKY domain
SMART	SM00774	2.4E-27	85	147	IPR003657	WRKY domain
Pfam	PF03106	2.3E-20	86	146	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MLQGSPSVSA VDARELMKGM MAKLSSAMSV LGTTSGGVEA SSEAGGRGPG GRRKRSGTVS 60 GPHRRSTSTR RSKSPFINMV TARTLNDGKT WRKYGQKCIH ACTNPRSYYR CSHKPDQGCQ 120 ATRQVQESDS NPSEYLISYY GQHTCKDPST FRSLIIQGAA DAAPPEDLPN LISFTSINGA 180 AAASTSSSPN HLVRDAADLH SMLFSRFSNY SSSPPVQEGV SSSSPSPSFH GEFTQYAGGQ 240 LVDVIGRRTS PLTVGSAPAE YWPVVGIAGV DTDAGAGMDS FPSSPSSLGF MSGSFGGSFG 300 NNVCDDDLFG FDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-22	78	146	1	69	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74606.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250904	0.0	AK250904.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf95l16, mRNA sequence.
GenBank	AK371133	0.0	AK371133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2126B02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181741.1	0.0	probable WRKY transcription factor 34
TrEMBL	A0A287H7W7	0.0	A0A287H7W7_HORVV; Uncharacterized protein
STRING	MLOC_74606.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12527	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	1e-21	WRKY DNA-binding protein 46