PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7470.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 230aa    MW: 25001.7 Da    PI: 5.3729
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7470.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31152208258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK +k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h
  MLOC_7470.1 152 DDGYKWRKYGQKAIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLVVTYEGLHLH 208
                  8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.037146211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-29147209IPR003657WRKY domain
SuperFamilySSF1182901.83E-26149209IPR003657WRKY domain
SMARTSM007741.3E-35151210IPR003657WRKY domain
PfamPF031064.1E-25152208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEEMGQESSR YPWQDYDLGF GEELMRELLD ETAAAAPSPT PTAAGAGCAD NSSSSNKGIG  60
DDEEEGGEGP AGRRRESMVN RLMSTVYSGP TLSDIESALS FTGAGAGDPL DGRGKYHYTP  120
SSPVVFSPEK VLGKMENKYT MKIKSCGNGL ADDGYKWRKY GQKAIKNSPN PRSYYRCTNP  180
RCNAKKQVER AVDEPDTLVV TYEGLHLHYT YSHFLQHQTT PPPAAAVAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211502081674Probable WRKY transcription factor 4
2lex_A3e-211502081674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7470.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-106HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198801.11e-131probable WRKY transcription factor 48
SwissprotQ9FHR72e-43WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A287MSQ61e-170A0A287MSQ6_HORVV; Uncharacterized protein
STRINGMLOC_7470.11e-172(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-45WRKY DNA-binding protein 49