PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74758.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 96aa    MW: 10987.4 Da    PI: 10.693
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74758.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.4e-211172157
                  TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++ R+++t+eq+++L elF+   r+ps+e++++++++l    +++ ++V++WFqN++a+e++
  MLOC_74758.3 11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsalgKVESKNVFYWFQNHKARERH 72
                  568*****************99**************************************95 PP
2Wus_type_Homeobox1101.3e-351273364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L++ Gk+e+kNVfyWFQN+kaRer++
       MLOC_74758.3 12 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSALGKVESKNVFYWFQNHKARERHH 73
                       78**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.3E-41077IPR001356Homeobox domain
SuperFamilySSF466891.07E-121277IPR009057Homeodomain-like
PfamPF000461.6E-181272IPR001356Homeobox domain
CDDcd000868.68E-41474No hitNo description
Gene3DG3DSA:1.10.10.603.1E-81471IPR009057Homeodomain-like
PROSITE profilePS5007110.1061873IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0016787Molecular Functionhydrolase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLSA LGKVESKNVF  60
YWFQNHKARE RHHHKKRRRV ASPSCSPDSS SNEEET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74758.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709471e-160AK370947.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2120M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174913.11e-60WUSCHEL-related homeobox 9-like
SwissprotQ8W0F11e-56WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLA0A287M1576e-64A0A287M157_HORVV; Uncharacterized protein
TrEMBLA0A287M1742e-64A0A287M174_HORVV; Uncharacterized protein
TrEMBLF2E4737e-64F2E473_HORVV; Predicted protein
STRINGMLOC_74758.11e-64(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.12e-32WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  3. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  4. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  5. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]