PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74813.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 227aa    MW: 25285.5 Da    PI: 10.7267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74813.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix108.83.6e-34388187
      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                  rW+k+ev+aLi++r e++e+ ++  +k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpyf+ql+a
  MLOC_74813.3  3 RWPKEEVHALIQLRMEKDEHCQDMGAKGPLWEDISAGMRRIGYNRSSKRCKEKWENINKYFKKVKESNKRR-PDDSKTCPYFHQLDA 88
                  8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.933160IPR017877Myb-like domain
CDDcd122031.39E-24267No hitNo description
PfamPF138372.1E-22389No hitNo description
SuperFamilySSF466893.81E-5370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-4359IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSRWPKEEVH ALIQLRMEKD EHCQDMGAKG PLWEDISAGM RRIGYNRSSK RCKEKWENIN  60
KYFKKVKESN KRRPDDSKTC PYFHQLDAIY RKKQFAVANA GGGCSGTASG NTLAAVNAAA  120
SEKENHPWRE LEGKVSNDFG RRYRVGGGSS DAPPGDAEMA AASTVLDAVG TSKRSPKTTC  180
SQWSQTCSPS RRSLRRRTRR TATTSKRTTP TTATMTTTAK TATRMTK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74813.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3725500.0AK372550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3004N20.
GenBankAK3754940.0AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184216.11e-106trihelix transcription factor GTL1-like
RefseqXP_020184217.11e-106trihelix transcription factor GTL1-like
TrEMBLM0YZH61e-128M0YZH6_HORVV; Uncharacterized protein
STRINGMLOC_74813.21e-127(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-47Trihelix family protein