PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74813.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 227aa    MW: 25272.1 Da    PI: 7.6269
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74813.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.7e-1434823787
      trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                  k++e g+ rs+k+Ckek+en+ k+y+++keg+ +r  ++ +++++f++lea
  MLOC_74813.5 34 KLAELGYCRSAKKCKEKFENVDKYYRRTKEGRAGR--QDGKNYRFFEELEA 82
                  6789*****************************97..66678******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-103483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
RGDGGAHQDP VGDGRRLPQR RPQGPRLGGG LQVKLAELGY CRSAKKCKEK FENVDKYYRR  60
TKEGRAGRQD GKNYRFFEEL EALHAAAPQH NHPMATATTI LPDPRPLAMA PAYPAAGLPD  120
LSLSSNSESE SDDGSDEGED QAGGGGRSNE SMMALFEGMI KQITEKQDAT QRLFLETLEK  180
WEADRTAREE AWRRQELARI SREREQHARE RAAAAARDAA LIAFLQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74813.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754940.0AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
GenBankAK3761290.0AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184216.16e-86trihelix transcription factor GTL1-like
RefseqXP_020184217.16e-86trihelix transcription factor GTL1-like
TrEMBLF2E8S61e-134F2E8S6_HORVV; Predicted protein (Fragment)
STRINGMLOC_74813.21e-135(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-27Trihelix family protein