PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74974.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 900aa    MW: 102169 Da    PI: 7.9313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74974.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.93.6e-22745804258
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   dDg++WrKYGqK++ gs++pr YYrC ++   gC++ k+++ ++ dp +++ +Y g+H +
  MLOC_74974.2 745 DDGFSWRKYGQKDILGSRYPRRYYRCKHRltqGCKAVKQLQATDGDPLLFNAMYVGNHIC 804
                   8***************************9999**************************87 PP
2WRKY46.76.5e-15860900239
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve 39 
                   dDgy+W KYGq ++ gs++pr YYrC ++   gC+++k+v+
  MLOC_74974.2 860 DDGYSWSKYGQMDILGSKHPRCYYRCVHKhdkGCQATKQVQ 900
                   8**************************999999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525409.03E-162105IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.8E-254131IPR002182NB-ARC
SuperFamilySSF520584.25E-22170537IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-15198220IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-15262489IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.801.7E-22731804IPR003657WRKY domain
SuperFamilySSF1182901.1E-20738804IPR003657WRKY domain
PROSITE profilePS5081119.921739802IPR003657WRKY domain
SMARTSM007745.8E-28744806IPR003657WRKY domain
PfamPF031064.2E-20745804IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-15846900IPR003657WRKY domain
SuperFamilySSF1182901.7E-14852900IPR003657WRKY domain
PROSITE profilePS5081116.398854900IPR003657WRKY domain
SMARTSM007743.6E-9859900IPR003657WRKY domain
PfamPF031062.4E-14860900IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MKPLCHDDSR KLFFRTAFGP QYECPPELSE VANNIIRKCA GFPLAVVTIA GLLVNQMGKP  60
EQWDFVNKSL GHGLRTNPAS EGMKQVLNLS YNNLRLHLKA CLMYLSIYEE DYMIQKNDLV  120
KQWIAEGFIH ATEEKDMVEI SRICFDDLIS SRMIQPAHIN DTGDVLSCTV HHMVVDFITH  180
KSLEENFVTA IDHCQTTARL ADKVRRLSLH FGNAEVTPPT NMRLLQVRTL AFFGVIKCLP  240
SIVEFGLLRI LILHLWGDDE SISFDLTGIS ELFRLRYLHV TCNATLEVPQ TQIRGLRYLE  300
TLKIDARVSA VPSDIVHLPG LLHLSLPVEA HLPNGIGCMT LLCTLECFDI SVNSVENVHS  360
LGELTNLRDL RLICSTVHSC YLTSKMDGVC SILTKLSNLR SLTLEPSSIL DVGPSSMIIS  420
CDGLSSVSSP PACLQTFEWL PRICTFSSLP KWIGHLSKLC ILKIGVRKLT NNDFDILRGL  480
PALTVLSLYI RTKPAKRILF NKIGFSVLKY FKFRCRAPSL EFEVDAMPNL LKLKLHFDAH  540
RVDQHGAIPV GIVHLTGLKE ISAKIGGVGV NDPDRRAAEL ALIDAIKMHP ARPTFSIHCL  600
DAMFSGEDDD IKKEDPIEHM TLQKQYDVKK EDSIERMTLQ KQCGIKKEDS TEHTTLQEQY  660
DIKKEESTEH MTLQIQNDIK KEESTEHMTL QIQNDIKKED SNKQHGVLQK DYRDDGNKHA  720
HGRRTLPKWS TQVRVSSLQD IEGHDDGFSW RKYGQKDILG SRYPRRYYRC KHRLTQGCKA  780
VKQLQATDGD PLLFNAMYVG NHICIQRVNL QPQPGHEQST ISVGDKAEGS MQRLEKMPLR  840
KSKRSIQVRM MSMQEDYPAD DGYSWSKYGQ MDILGSKHPR CYYRCVHKHD KGCQATKQVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-214187318504Disease resistance RPP13-like protein 4
6j5t_F2e-214187318504Disease resistance RPP13-like protein 4
6j5t_G2e-214187318504Disease resistance RPP13-like protein 4
6j5t_L2e-214187318504Disease resistance RPP13-like protein 4
6j5t_O2e-214187318504Disease resistance RPP13-like protein 4
6j5u_A2e-214187318504Disease resistance RPP13-like protein 4
6j5v_A2e-214187318504Disease resistance RPP13-like protein 4
6j5w_A2e-214187318504Disease resistance RPP13-like protein 4
6j6i_C2e-214187318504Disease resistance RPP13-like protein 4
6j6i_F2e-214187318504Disease resistance RPP13-like protein 4
6j6i_G2e-214187318504Disease resistance RPP13-like protein 4
6j6i_L2e-214187318504Disease resistance RPP13-like protein 4
6j6i_O2e-214187318504Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74974.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8631080.0DQ863108.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 24 (WRKY24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161814.10.0putative disease resistance RPP13-like protein 2 isoform X1
RefseqXP_020161816.10.0putative disease resistance RPP13-like protein 2 isoform X3
TrEMBLA0A287S3Y80.0A0A287S3Y8_HORVV; Uncharacterized protein
STRINGMLOC_74974.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-30WRKY family protein