PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74974.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 1180aa    MW: 133868 Da    PI: 8.0523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74974.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.55e-2210771136258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                    dDg++WrKYGqK++ gs++pr YYrC ++   gC++ k+++ ++ dp +++ +Y g+H +
  MLOC_74974.3 1077 DDGFSWRKYGQKDILGSRYPRRYYRCKHRltqGCKAVKQLQATDGDPLLFNAMYVGNHIC 1136
                    8***************************9999**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147984.69E-910131No hitNo description
SuperFamilySSF525403.37E-54162437IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.2E-15183330IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.9E-56183463IPR002182NB-ARC
PRINTSPR003642.1E-14202217No hitNo description
PRINTSPR003642.1E-14274288No hitNo description
PRINTSPR003642.1E-14371385No hitNo description
SuperFamilySSF520587.48E-22502869IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-15594821IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.1E-14726742No hitNo description
Gene3DG3DSA:2.20.25.802.3E-2210631136IPR003657WRKY domain
SuperFamilySSF1182901.57E-2010701136IPR003657WRKY domain
PROSITE profilePS5081119.92110711134IPR003657WRKY domain
SMARTSM007745.8E-2810761138IPR003657WRKY domain
PfamPF031065.9E-2010771136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1180 aa     Download sequence    Send to blast
MADAMFRLPE KLDALLASHG QTLPRGAEEE IPLIKQDLEK MVAILQEHDD SGAEDRAMTA  60
KCLAKEVREL SYDMEDSVDQ YEQTATTSKW IAPRLKKQKF ARRRVTRLPV KLRWRLWMAN  120
KIREFSLRSQ EALQRYSLFN HHGDNAIRAA AIGGTGTSTP PRHDASFGSW YPTPYEELVG  180
IGEHVNNLEA WLGRDGEQRL KVVTVVGSGG IGKSTLVKEL YRRMKGQFEC RAFVRTSRKP  240
NIRRLLINML SQVRPHQTSH TWKLHSLIAD IRTHLQDKRY LIVIDDVWAT QTWDIVNRAL  300
PDGNLYSGIL ITTEIDDVAL KCGGYDSKYV LPMKPLCHDD SRKLFFRTAF GPQYECPPEL  360
SEVANNIIRK CAGFPLAVVT IAGLLVNQMG KPEQWDFVNK SLGHGLRTNP ASEGMKQVLN  420
LSYNNLRLHL KACLMYLSIY EEDYMIQKND LVKQWIAEGF IHATEEKDMV EISRICFDDL  480
ISSRMIQPAH INDTGDVLSC TVHHMVVDFI THKSLEENFV TAIDHCQTTA RLADKVRRLS  540
LHFGNAEVTP PTNMRLLQVR TLAFFGVIKC LPSIVEFGLL RILILHLWGD DESISFDLTG  600
ISELFRLRYL HVTCNATLEV PQTQIRGLRY LETLKIDARV SAVPSDIVHL PGLLHLSLPV  660
EAHLPNGIGC MTLLCTLECF DISVNSVENV HSLGELTNLR DLRLICSTVH SCYLTSKMDG  720
VCSILTKLSN LRSLTLEPSS ILDVGPSSMI ISCDGLSSVS SPPACLQTFE WLPRICTFSS  780
LPKWIGHLSK LCILKIGVRK LTNNDFDILR GLPALTVLSL YIRTKPAKRI LFNKIGFSVL  840
KYFKFRCRAP SLEFEVDAMP NLLKLKLHFD AHRVDQHGAI PVGIVHLTGL KEISAKIGGV  900
GVNDPDRRAA ELALIDAIKM HPARPTFSIH CLDAMFSGED DDIKKEDPIE HMTLQKQYDV  960
KKEDSIERMT LQKQCGIKKE DSTEHTTLQE QYDIKKEEST EHMTLQIQND IKKEESTEHM  1020
TLQIQNDIKK EDSNKQHGVL QKDYRDDGNK HAHGRRTLPK WSTQVRVSSL QDIEGHDDGF  1080
SWRKYGQKDI LGSRYPRRYY RCKHRLTQGC KAVKQLQATD GDPLLFNAMY VGNHICIQRV  1140
NLQPQPGHEQ STISVGDKAE GSMQRLEKMP LRPSEAYRCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-4215191504Disease resistance RPP13-like protein 4
6j5t_F3e-4215191504Disease resistance RPP13-like protein 4
6j5t_G3e-4215191504Disease resistance RPP13-like protein 4
6j5t_L3e-4215191504Disease resistance RPP13-like protein 4
6j5t_O3e-4215191504Disease resistance RPP13-like protein 4
6j5u_A3e-4215191504Disease resistance RPP13-like protein 4
6j5v_A3e-4215191504Disease resistance RPP13-like protein 4
6j5w_A3e-4215191504Disease resistance RPP13-like protein 4
6j6i_C3e-4215191504Disease resistance RPP13-like protein 4
6j6i_F3e-4215191504Disease resistance RPP13-like protein 4
6j6i_G3e-4215191504Disease resistance RPP13-like protein 4
6j6i_L3e-4215191504Disease resistance RPP13-like protein 4
6j6i_O3e-4215191504Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74974.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8631080.0DQ863108.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 24 (WRKY24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161815.10.0putative disease resistance RPP13-like protein 2 isoform X2
TrEMBLA0A287S3Y80.0A0A287S3Y8_HORVV; Uncharacterized protein
STRINGMLOC_74974.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-30WRKY family protein