PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74974.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 248aa    MW: 27739.7 Da    PI: 5.7272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74974.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.71.4e-2464124259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   dDgy+W KYGq ++ gs++pr YYrC ++   gC+++k+v+rs++d+++++i+Y+geH++ 
  MLOC_74974.6  64 DDGYSWSKYGQMDILGSKHPRCYYRCVHKhdkGCQATKQVQRSDSDTQLFDIVYHGEHTCA 124
                   8**************************999999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-2650124IPR003657WRKY domain
SuperFamilySSF1182904.18E-2356124IPR003657WRKY domain
PROSITE profilePS5081120.57658121IPR003657WRKY domain
SMARTSM007742.1E-3363125IPR003657WRKY domain
PfamPF031064.3E-2464123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYVGNHICIQ RVNLQPQPGH EQSTISVGDK AEGSMQRLEK MPLRKSKRSI QVRMMSMQED  60
YPADDGYSWS KYGQMDILGS KHPRCYYRCV HKHDKGCQAT KQVQRSDSDT QLFDIVYHGE  120
HTCAENVHSQ CESAHLLLHH ISASMGLMPP ATSESQVTNE AASSGSTAGV RFMSPATSAG  180
SQVTYERGSR STTTDRFMSP GTSESQVAYK EFTDDEFVYL DFMPNSPVDQ RLDLNADFVD  240
DTGYPDTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-18651211874Disease resistance protein RRS1
5w3x_D7e-18651211874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74974.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8631080.0DQ863108.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 24 (WRKY24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161814.11e-125putative disease resistance RPP13-like protein 2 isoform X1
RefseqXP_020161816.11e-125putative disease resistance RPP13-like protein 2 isoform X3
TrEMBLA0A287S3Y81e-173A0A287S3Y8_HORVV; Uncharacterized protein
TrEMBLA0A287S4471e-173A0A287S447_HORVV; Uncharacterized protein
TrEMBLA0A287S4571e-177A0A287S457_HORVV; Uncharacterized protein
TrEMBLM0Z0120.0M0Z012_HORVV; Uncharacterized protein
STRINGMLOC_74974.51e-175(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-24WRKY family protein