PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75092.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CO-like
Protein Properties Length: 329aa    MW: 35929.7 Da    PI: 6.5111
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75092.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-082468341
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  +++C+ + + +  ++C+ ++  lC+ C    H+       H++vp
  MLOC_75092.2 24 QQRCDSCRSAPCAFYCRADSAALCAACDADVHSAntlasrHRRVP 68
                  589*****************************6689999999988 PP
2CCT66.57.6e-23260303144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   Rea++ RY+eKrk R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  MLOC_75092.2 260 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRA 303
                   9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.5472269IPR000315B-box-type zinc finger
SMARTSM003368.0E-142269IPR000315B-box-type zinc finger
PfamPF006432.4E-62568IPR000315B-box-type zinc finger
CDDcd000210.001592669No hitNo description
PfamPF062039.2E-17260302IPR010402CCT domain
PROSITE profilePS5101716.688260302IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIKAEPDLRG QLRGSAGVGG MQLQQRCDSC RSAPCAFYCR ADSAALCAAC DADVHSANTL  60
ASRHRRVPMG AVAPASPAGG AFVVRPGGVN SSWPIREGRR SYYDDREGEE EEATSWLLLD  120
PLRGSEADAP AFGDALVADF LDLGRAGEKE ASSKDYHGHG MESNEGSHDH ELVVPGEPVA  180
QLHERQGFTA EMAYDAQNSN HGYGFGATFE RSLSMSSSPD NSSTVQDVSS SYMRRSESSV  240
DLFSTAAHTS PQFMGMAMDR EARVHRYREK RKMRRFEKTI RYASRKAYAE TRPRIKGRFA  300
KRADADLEVD QYFSAAALSD SSCGVVPTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273REKRKMR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75092.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4904710.0AF490471.1 Hordeum vulgare subsp. vulgare cultivar CI16155 CONSTANS-like protein (CO3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196886.10.0zinc finger protein CO3-like
SwissprotO821171e-124CO3_ORYSJ; Zinc finger protein CO3
TrEMBLQ8LKZ40.0Q8LKZ4_HORVV; CONSTANS-like protein
STRINGMLOC_75092.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-31CONSTANS-like 2