PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75188.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 223aa    MW: 23924.3 Da    PI: 11.0148
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75188.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-1896130135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  MLOC_75188.1  96 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 130
                   99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.0E-1790140IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.41390126IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.8E-1590127IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-1592153No hitNo description
CDDcd002023.23E-1395146No hitNo description
PROSITE patternPS00344096121IPR000679Zinc finger, GATA-type
PfamPF003203.6E-1696130IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
WGRSEAQAGQ VAVPGKARSK RSRVAPCNWS SRLLVLPPAP ASPPSPASAV ISPSESGTAF  60
PLFPNKKPAK SSKKKEAPAA PAMTAAEAAA AEGRRCLHCE TDKTPQWRTG PLGPKTLCNA  120
CGVRYKSGRL VPEYRPAASP TFVPSKHSNS HRKVVELRRQ KDAPPTQHQL LHQQPQQHQL  180
GQGLGFHVPS PLLFDGPAAP HLGGGAEEFL IRNRIGPDHR QLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614110.0AK361411.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140A11.
GenBankAK3767680.0AK376768.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155749.16e-98GATA transcription factor 12-like
SwissprotP697813e-55GAT12_ARATH; GATA transcription factor 12
TrEMBLF2DBZ61e-157F2DBZ6_HORVV; GATA transcription factor
STRINGMLOC_75188.11e-160(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-48GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]