PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75297.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 199aa    MW: 21126.8 Da    PI: 10.4561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75297.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.42.7e-44241611127
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevl 93 
                   lp+GfrF+Ptdeelv +yLk+k++g+ ++   +i++vd+  vePwdLp +  +k+++ ew+fF++rd+ +   +++r+ r+t++gyWkatgkd+ + 
  MLOC_75297.2  24 LPVGFRFRPTDEELVRHYLKAKIAGRAHPDLLAIPDVDLAAVEPWDLPaRsVIKSDDPEWFFFARRDRPKYpgKSSRSCRSTAAGYWKATGKDRLIR 120
                   79*************************999899***************5347777888********9855435678999*****************9 PP

           NAM  94 sk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                            kg+l+g+kktLvf++grap+g +t W+mhey+
  MLOC_75297.2 121 GPgpggcrgKGALIGVKKTLVFHRGRAPRGARTPWIMHEYT 161
                   9999999888889***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-4715167IPR003441NAC domain
PROSITE profilePS5100548.54824198IPR003441NAC domain
PfamPF023652.8E-2625161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTTTAAAAGA ESSSSSASPS EAALPVGFRF RPTDEELVRH YLKAKIAGRA HPDLLAIPDV  60
DLAAVEPWDL PARSVIKSDD PEWFFFARRD RPKYPGKSSR SCRSTAAGYW KATGKDRLIR  120
GPGPGGCRGK GALIGVKKTL VFHRGRAPRG ARTPWIMHEY TAVSADNPVH HSGSQSASAS  180
ASASAAGPQN VTCLLAFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-352016011138Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75297.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171646.11e-98uncharacterized protein LOC109757228
SwissprotF4JN352e-55NTL9_ARATH; Protein NTM1-like 9
TrEMBLM0Z1461e-142M0Z146_HORVV; Uncharacterized protein
STRINGMLOC_75297.21e-143(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-54NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]