PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75367.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 146aa    MW: 16887.2 Da    PI: 10.1259
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75367.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.8e-2055137191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fYn+YA   GF+ ++ +++ +      +k ++ C+++gk++ + +  +++r++++ ++t+C+ak+ vk+  +g+we t++++eHnH+l+p
  MLOC_75367.2  55 RFYNTYALLKGFEAKRGTNYMR------KKFHLICNRSGKSKATPDL-HRKRKRKSIEKTNCQAKVIVKLV-KGQWEFTTVRNEHNHPLCP 137
                   5*****************9998......4678***********9988.9999*******************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1855137IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLRSNTSSET DSDSSSGSDS DSELGKYFYP QIEQLEMAKQ PEPGMKFQTL EDAHRFYNTY  60
ALLKGFEAKR GTNYMRKKFH LICNRSGKSK ATPDLHRKRK RKSIEKTNCQ AKVIVKLVKG  120
QWEFTTVRNE HNHPLCPSSS LTKFYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75367.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601620.0AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161795.17e-80protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A287QHC21e-101A0A287QHC2_HORVV; Uncharacterized protein
TrEMBLA0A287QHD21e-103A0A287QHD2_HORVV; Uncharacterized protein
STRINGMLOC_75367.11e-99(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-13FAR1-related sequence 8