PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75723.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 193aa    MW: 22244.2 Da    PI: 7.0788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75723.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-17119192386
                   EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                   k++  + +l    l++p +f  eh   + ++++l+l de+ ++++v++  r +s++  l +GW+eFv +n+L egD +vF+l++
  MLOC_75723.1 119 KTM--PQSL--TSLYIPAQFSMEHL--PDRGMKLVLVDEEEEEFKVQY--RPHSSS--LVTGWSEFVMDNELVEGDCLVFQLIR 192
                   444..3333..449******99995..34899****************..999988..778********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-18110192IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-18111192IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787113193IPR003340B3 DNA binding domain
CDDcd100172.95E-18115193No hitNo description
SMARTSM010193.4E-7117193IPR003340B3 DNA binding domain
PfamPF023622.4E-14118192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MADANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKLQKRKASK PRDAADDAPP  60
RRSGRIATLP EQPDYRDNVK LGTGKPRQQK EVKPDHAYAI AKAEELRDEL GSDYPTFVKT  120
MPQSLTSLYI PAQFSMEHLP DRGMKLVLVD EEEEEFKVQY RPHSSSLVTG WSEFVMDNEL  180
VEGDCLVFQL IRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743460.0AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158478.11e-124B3 domain-containing protein Os06g0194400-like
SwissprotQ69V361e-59Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A287HHE11e-139A0A287HHE1_HORVV; Uncharacterized protein
STRINGMLOC_75723.11e-140(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-21B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]