PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_75723.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 192aa MW: 22116 Da PI: 7.0788

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_75723.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.5	8.7e-17	118	191	3	86
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k++ + +l l++p +f eh + ++++l+l de+ ++++v++ r +s++ l +GW+eFv +n+L egD +vF+l++ MLOC_75723.2 118 KTM--PQSL--TSLYIPAQFSMEHL--PDRGMKLVLVDEEEEEFKVQY--RPHSSS--LVTGWSEFVMDNELVEGDCLVFQLIR 191 444..3333..449****99995..34899************..999988..778******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.15E-18	109	191	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.8E-18	110	191	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.787	112	192	IPR003340	B3 DNA binding domain
CDD	cd10017	2.90E-18	114	192	No hit	No description
SMART	SM01019	3.4E-7	116	192	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-14	117	191	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MADANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKLKRKASKP RDAADDAPPR 60 RSGRIATLPE QPDYRDNVKL GTGKPRQQKE VKPDHAYAIA KAEELRDELG SDYPTFVKTM 120 PQSLTSLYIP AQFSMEHLPD RGMKLVLVDE EEEEFKVQYR PHSSSLVTGW SEFVMDNELV 180 EGDCLVFQLI RR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_75723.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374346	0.0	AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158478.1	1e-126	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	9e-59	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A287HHQ2	1e-138	A0A287HHQ2_HORVV; Uncharacterized protein
TrEMBL	F2EDX1	1e-138	F2EDX1_HORVV; Predicted protein (Fragment)
STRING	MLOC_75723.1	1e-134	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-21	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]