PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75723.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 77aa    MW: 8992.33 Da    PI: 4.4132
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75723.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-176731487
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                    l++p +f  eh   + ++++l+l de+ ++++v++  r +s++  l +GW+eFv +n+L egD +vF+l++r
  MLOC_75723.3  6 TSLYIPAQFSMEHL--PDRGMKLVLVDEEEEEFKVQY--RPHSSS--LVTGWSEFVMDNELVEGDCLVFQLIRR 73
                  469******99995..34899****************..999988..778********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.238177IPR003340B3 DNA binding domain
SMARTSM010193.6E-6177IPR003340B3 DNA binding domain
CDDcd100171.92E-14473No hitNo description
Gene3DG3DSA:2.40.330.104.4E-17676IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-15673IPR003340B3 DNA binding domain
SuperFamilySSF1019363.4E-17776IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MPQSLTSLYI PAQFSMEHLP DRGMKLVLVD EEEEEFKVQY RPHSSSLVTG WSEFVMDNEL  60
VEGDCLVFQL IRRALFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75723.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743461e-126AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158478.13e-44B3 domain-containing protein Os06g0194400-like
TrEMBLA0A287HHE11e-49A0A287HHE1_HORVV; Uncharacterized protein
TrEMBLA0A287HHQ21e-49A0A287HHQ2_HORVV; Uncharacterized protein
TrEMBLA0A287HHQ67e-50A0A287HHQ6_HORVV; Uncharacterized protein
STRINGMLOC_75723.18e-48(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-16B3 family protein