PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_75808.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 247aa MW: 28582 Da PI: 6.7918

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_75808.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.8	4.1e-19	77	170	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+ YA+++GF vr kk + +ge +++ +vC + + ++k + + er +++++rt+C ++ vk++ d+ w+vt++ +HnH+l MLOC_75808.1 77 HYKMYARQTGFGVRYCFRKKAEASGELIRASLVCHRAALKIKKKVDtqnpqpISPERWRNTTERTNCPTRMSVKRR-DNSWVVTEIIDDHNHPLI 170 6**********************************999888888677777777788**************.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-17	77	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDSHFLAAHD TDRETVSASR TLLQQPANTE QTLDASSNHT PNDDNANEDE GIMEVMPTPQ 60 QPTTTMRFDT LEDAEKHYKM YARQTGFGVR YCFRKKAEAS GELIRASLVC HRAALKIKKK 120 VDTQNPQPIS PERWRNTTER TNCPTRMSVK RRDNSWVVTE IIDDHNHPLI KKWSLTGYLQ 180 SHRHIPEEEQ QFVKLLHSCN LEPSRQMQLL TELHGQCEAF GYTNKDLANL LAKFWAEHKY 240 SDMQDTI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_75808.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0Z2D2	0.0	M0Z2D2_HORVV; Uncharacterized protein
STRING	MLOC_75808.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-15	FAR1-related sequence 5