PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_75808.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 195aa MW: 22918.2 Da PI: 8.9599

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_75808.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.6	2.3e-19	25	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+ YA+++GF vr kk + +ge +++ +vC + + ++k + + er +++++rt+C ++ vk++ d+ w+vt++ +HnH+l MLOC_75808.2 25 HYKMYARQTGFGVRYCFRKKAEASGELIRASLVCHRAALKIKKKVDtqnpqpISPERWRNTTERTNCPTRMSVKRR-DNSWVVTEIIDDHNHPLI 118 6**********************************999888888677777777788**************.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-17	25	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEVMPTPQQP TTTMRFDTLE DAEKHYKMYA RQTGFGVRYC FRKKAEASGE LIRASLVCHR 60 AALKIKKKVD TQNPQPISPE RWRNTTERTN CPTRMSVKRR DNSWVVTEII DDHNHPLIKK 120 WSLTGYLQSH RHIPEEEQQF VKLLHSCNLE PSRQMQLLTE LHGQCEAFGY TNKDLANLLA 180 KFWAEHKYSD MQDTI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_75808.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0Z2D2	1e-147	M0Z2D2_HORVV; Uncharacterized protein
STRING	MLOC_75808.1	1e-148	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1-related sequence 5