PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_75867.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YB

Protein Properties

Length: 163aa MW: 17824 Da PI: 8.6815

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_75867.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	122.3	2.1e-38	26	117	6	97
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 lP+anv+r+m++vlP+n ki++ ak+++++c++ef++fv +eas++++ e r+t++++d+ w+ +lGf+ yv+p+++yl+ yre ++++ MLOC_75867.1 26 SALPMANVVRLMRRVLPSNVKIAESAKQLTHDCAVEFVGFVRGEASERARSEYRRTVAPEDFTWSCQSLGFDSYVQPMQTYLRGYREYDTAR 117 689************************************************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-30	22	122	IPR009072	Histone-fold
SuperFamily	SSF47113	6.48E-24	27	119	IPR009072	Histone-fold
Pfam	PF00808	6.4E-15	28	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.6E-7	55	73	No hit	No description
PRINTS	PR00615	4.6E-7	74	92	No hit	No description
PRINTS	PR00615	4.6E-7	93	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MGGRSKKHGG QRGEGDEENP AAEGGSALPM ANVVRLMRRV LPSNVKIAES AKQLTHDCAV 60 EFVGFVRGEA SERARSEYRR TVAPEDFTWS CQSLGFDSYV QPMQTYLRGY REYDTARGRS 120 TRGARAPAPP AMTSFASPGE PVTVTKEELE FLRSVIPPPP GGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-28	23	112	8	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_75867.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175589.1	4e-96	nuclear transcription factor Y subunit B-1-like
Swissprot	Q6Z348	1e-41	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A3B6QH88	9e-95	A0A3B6QH88_WHEAT; Uncharacterized protein
STRING	MLOC_75867.1	1e-116	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-23	nuclear factor Y, subunit B6