PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75886.1
Common NameCBF1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 217aa    MW: 23137.8 Da    PI: 5.0904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75886.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-1854104155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                   + ykGVr++   grWv+e+r+p     +  +r++lg+f tae+Aa+a++ a+++l+g
  MLOC_75886.1  54 PVYKGVRRRN-PGRWVCEVREP-----HskQRIWLGTFETAEMAARAHDVAALALRG 104
                   68*****887.9******9996.....335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1354104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3155114IPR001471AP2/ERF domain
SMARTSM003805.9E-2855118IPR001471AP2/ERF domain
PROSITE profilePS5103222.19455112IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2155113IPR016177DNA-binding domain
CDDcd000184.64E-2156114No hitNo description
PRINTSPR003672.6E-85667IPR001471AP2/ERF domain
PRINTSPR003672.6E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDVGALSSDY SSGTPSPVGA DGGNSEGFST YMTVSSAPPK RRAGRTKFKE TRHPVYKGVR  60
RRNPGRWVCE VREPHSKQRI WLGTFETAEM AARAHDVAAL ALRGRAACLN FADSPRRLRV  120
PAVGASPDEI RRAAVEAAEA FLPAPDQSNA PAEEVAAAPT MQFAGDPYYG MDDGMDFGMQ  180
GYLDMAQGML IAPPPLVGPS ATAGDGDDDG EVSLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14531111271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75886.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4182040.0AF418204.1 Hordeum vulgare subsp. vulgare CRT/DRE binding factor 1 (CBF1) mRNA, complete cds.
GenBankAY7858360.0AY785836.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF1 (CBF1) gene, complete cds.
GenBankAY7858370.0AY785837.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF1 (CBF1) gene, complete cds.
GenBankAY7858390.0AY785839.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF1 (CBF1) gene, complete cds.
GenBankJF7966550.0JF796655.1 Hordeum vulgare subsp. spontaneum isolate T1 CBF protein 1 (CBF1) gene, complete cds.
GenBankJF7966770.0JF796677.1 Hordeum vulgare isolate T2 CBF protein 1 (CBF1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193547.11e-128dehydration-responsive element-binding protein 1G-like
SwissprotQ6EP771e-100DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLG4XE691e-156G4XE69_HORVS; CBF protein 1
TrEMBLG4XE911e-156G4XE91_HORVU; CBF protein 1
TrEMBLQ8S4R31e-156Q8S4R3_HORVV; CRT/DRE binding factor 1
STRINGMLOC_75886.11e-157(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.19e-40dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]