PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76252.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 155aa    MW: 17801.3 Da    PI: 10.8389
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76252.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.43.7e-3227126297
        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                   lfqrlw++e e+++L+G+++f++++g+   +++ d+  fye +++++sf++sk+ql+eK+rrLKkK++ + ++ a++g  ++f+++h+  i+++++ 
  MLOC_76252.1  27 LFQRLWTDEEELLILRGFLEFTSRRGTafASHQyDTGPFYEEIRRKLSFDFSKNQLIEKLRRLKKKYRVCATRmASQGAAFAFKSAHEGAIYDVARH 123
                   79************************99877778**************************************98899******************** PP

        DUF573  95 iWg 97 
                   iW+
  MLOC_76252.1 124 IWR 126
                   **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.9E-2928125IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPLPLSSPNQ PAQFRRLRRR GRVPRRLFQR LWTDEEELLI LRGFLEFTSR RGTAFASHQY  60
DTGPFYEEIR RKLSFDFSKN QLIEKLRRLK KKYRVCATRM ASQGAAFAFK SAHEGAIYDV  120
ARHIWRPAFK RDGAGGDASD EDDINPAEAA AVAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738130.0AK373813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044F12.
GenBankAK3764050.0AK376405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186498.12e-78probable transcription factor At3g04930
SwissprotF4K5T43e-32STKLU_ARATH; Probable transcription factor At5g28040
SwissprotQ9CAV75e-32STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A287R7331e-108A0A287R733_HORVV; Uncharacterized protein
STRINGMLOC_76252.11e-110(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-29DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]