PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76302.1

Common Name

LAS1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 261aa MW: 28121.1 Da PI: 7.6058

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76302.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	210.8	7.7e-65	1	261	122	374
GRAS 122 GlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl............vakrledleleeLrvkpgEala 203 G+QWp+Llqa+a+R+ gpp++RiTg g+ ++++l +tg+rL+ fA+++++pf+f++l ++++ + + +L+++p+E+la MLOC_76302.1 1 GVQWPPLLQAIAERAdpaLGPPEVRITGAGA----DRDTLLRTGNRLRAFARSIQLPFHFTPLllscaasthhvaGTSTTPSTAVTSLEIRPDETLA 93 89***********66666*******....9***********************88877766543222344445899******* PP GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 Vn+vl lh+l ++e ++Lk vk + P vv+v+e+ea+ ++ ++ +r+ a+++ysa+f++lea++p+ s+er vE+e+lgrei+ MLOC_76302.1 94 VNCVLFLHKLG-----GQDELAAFLKWVKAMAPAVVTVAEREASGGGIdpidELPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEA 185 ******8.....2233577***************99976556669**************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v g + + le+W + + GF + pls +a++qa+lllr ++ s+gy v+e++g+ +lgW++rpL+svSaW+ MLOC_76302.1 186 AVGSTGGR---WWRGLERWATAARGTGFAARPLSAFAVSQARLLLRLHYpSEGYLVQESRGACFLGWQTRPLLSVSAWQ 261 999987...7899***************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.892	1	240	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-62	1	261	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
GVQWPPLLQA IAERADPALG PPEVRITGAG ADRDTLLRTG NRLRAFARSI QLPFHFTPLL 60 LSCAASTHHV AGTSTTPSTA VTSLEIRPDE TLAVNCVLFL HKLGGQDELA AFLKWVKAMA 120 PAVVTVAERE ASGGGIDPID ELPRRVGVAM DHYSAVFEAL EATVPPGSRE RLAVEQEVLG 180 REIEAAVGST GGRWWRGLER WATAARGTGF AARPLSAFAV SQARLLLRLH YPSEGYLVQE 240 SRGACFLGWQ TRPLLSVSAW Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-31	1	260	140	378	Protein SCARECROW
5b3h_A	2e-31	1	260	139	377	Protein SCARECROW
5b3h_D	2e-31	1	260	139	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76302.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364492	0.0	AK364492.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025N14.
GenBank	JF710616	0.0	JF710616.1 Hordeum vulgare lateral suppressor 1 (LAS1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179440.1	0.0	protein MONOCULM 1-like
Swissprot	Q84MM9	1e-142	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	F2DKS4	0.0	F2DKS4_HORVV; Predicted protein
TrEMBL	F5CJB4	0.0	F5CJB4_HORVU; Lateral suppressor 1
STRING	MLOC_76302.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	3e-60	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Raatz B, et al. Specific expression of LATERAL SUPPRESSOR is controlled by an evolutionarily conserved 3' enhancer. Plant J., 2011. 68(3): p. 400-12 [PMID:21722220] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]