PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76431.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 231aa MW: 26592.4 Da PI: 10.172

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76431.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.7	3.7e-17	135	225	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+ +t+s+v+ +l+lp +f+++h k ++ l+lede+g + e + k++ l++GW++F+ +++L +gD +vF+l++r++f +v ++ MLOC_76431.1 135 FVRPMTQSHVTGGFWLSLPMPFCRKHLPK--RDERLILEDEQGVESETLYLAPKNG----LSAGWRGFAIQHDLVDGDCLVFELIDRTKF--KVYII 223 78899*******************423..4457*******9999555555....9**********************99999..99998 PP -S CS B3 98 rk 99 r+ MLOC_76431.1 224 RQ 225 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-19	131	226	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.04E-22	132	226	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.58E-25	134	224	No hit	No description
Pfam	PF02362	3.7E-15	135	225	IPR003340	B3 DNA binding domain
SMART	SM01019	6.0E-18	135	226	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.392	135	226	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPAKSVKR KRVPREDGED 60 APVRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGSRKTTS TRSDLINRVY ATDVAREYAI 120 AKAKELQAKL ESASFVRPMT QSHVTGGFWL SLPMPFCRKH LPKRDERLIL EDEQGVESET 180 LYLAPKNGLS AGWRGFAIQH DLVDGDCLVF ELIDRTKFKV YIIRQSSYYE P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76431.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160679.1	1e-142	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	1e-98	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A287W2A7	1e-168	A0A287W2A7_HORVV; Uncharacterized protein
STRING	MLOC_76431.2	1e-170	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-60	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]