PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76431.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 224aa MW: 25691.4 Da PI: 10.2705

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76431.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.7	6.5e-16	135	218	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ +t+s+v+ +l+lp +f+++h k ++ l+lede+g + e + k++ l++GW++F+ +++L +gD +vF+l++r++f MLOC_76431.3 135 FVRPMTQSHVTGGFWLSLPMPFCRKHLPK--RDERLILEDEQGVESETLYLAPKNG----LSAGWRGFAIQHDLVDGDCLVFELIDRTKF 218 78899*******************423..4457*******9999555555....9**********************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-16	131	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-19	132	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.53E-22	134	219	No hit	No description
SMART	SM01019	5.9E-13	135	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.038	135	224	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.8E-14	135	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPAKSVKR KRVPREDGED 60 APVRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGSRKTTS TRSDLINRVY ATDVAREYAI 120 AKAKELQAKL ESASFVRPMT QSHVTGGFWL SLPMPFCRKH LPKRDERLIL EDEQGVESET 180 LYLAPKNGLS AGWRGFAIQH DLVDGDCLVF ELIDRTKFKG LHYQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76431.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160679.1	1e-133	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	8e-91	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A287W2A3	1e-159	A0A287W2A3_HORVV; Uncharacterized protein
STRING	MLOC_76431.2	1e-160	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-56	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]