PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76441.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 395aa    MW: 42516.2 Da    PI: 10.6288
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76441.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.7e-31329387259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  MLOC_76441.1 329 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGDHNHN 387
                   69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-16282326IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33316388IPR003657WRKY domain
PROSITE profilePS5081129.953323389IPR003657WRKY domain
SuperFamilySSF1182901.28E-26326388IPR003657WRKY domain
SMARTSM007744.4E-38328388IPR003657WRKY domain
PfamPF031061.7E-26330386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDGMEESNRE AVQSCYKVLN LLSNPRGQLV PHKELVEATG AAVAKFGSLA SKIGDGNGRQ  60
GHARFRQRIK KPMPLFDSNL FRESPASAAA ADAAAAPKTS NPGPSTSLQL FPRYQQMEGS  120
SSKDPVRIPA QFPQRMVVEN PSVGSNGPAR GPPLQLVQPV SVAPPAGTPT PALPAAHLHF  180
IQQQQSYQRF QLMHQMKLQS EMMKRGGHGD QGQGGSTSGG KGVNLKFDGS NCTGSSSRSF  240
LTSLSLEGSM ASMDGSRSSR PFQLVSGSQT SSTPELGLMQ QRRRCAGKED GSGRCATGSR  300
CHCAKKRKLR IRRSIKVPAI SNKVADIPAD EFSWRKYGQK PIKGSPHPRG YYKCSSVRGC  360
PARKHVERCV DDPAMLIVTY EGDHNHNRAA AAQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-193253871475Probable WRKY transcription factor 4
2lex_A3e-193253871475Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404080.0DQ840408.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179772.10.0protein WRKY1-like
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLM0Z3L20.0M0Z3L2_HORVV; Uncharacterized protein
STRINGMLOC_76441.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-53WRKY DNA-binding protein 21