PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76450.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 242aa    MW: 26685.8 Da    PI: 8.2225
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76450.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000125779123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C + F++   L  H+++H
  MLOC_76450.1 57 YTCTFCRREFRSAQALGGHMNVH 79
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-65484No hitNo description
PROSITE profilePS5015711.1575784IPR007087Zinc finger, C2H2
PfamPF139121.8E-55780IPR007087Zinc finger, C2H2
SMARTSM003550.00665779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAANYYWGMW GAATTNTTAA TYPAPASAAE PSWEEQAFAR DAAGHLGVGC VWPPRSYTCT  60
FCRREFRSAQ ALGGHMNVHR RDRARLRQCA SPPDHQVQPQ PTSPYDHHEH LQPGMQYRAA  120
VRPKSPQDQQ ASMIGSSTSS PSYISSIIKE NRNKVFIAIP AEEASESGDE EERRKRRRVD  180
QPPAVALPFF VRRSPASCER ERMQGADDGD TKVPKAAPSP SPLLLAVGLQ EVDLELRLGT  240
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135279229superman protein
2l1o_A4e-135279229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173177RKRRR
2174178KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730831e-50EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192921.11e-154zinc finger protein 8-like
TrEMBLM0Z3L61e-179M0Z3L6_HORVV; Uncharacterized protein
STRINGMLOC_76450.11e-180(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-26zinc-finger protein 10