PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_7649.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 259aa MW: 29390 Da PI: 7.3456

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_7649.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.7	8.5e-13	17	101	10	98
HHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++s+ +lp kfa+ +g +++ +++l+ + W+v + ++ + +++l++G k+Fv+a++L+ g +vF++dg ++ l+vkvf+ MLOC_7649.1 17 SFSSQ--RLPDKFAKLLDGREPR--EVKLREAGSgrgSLWDVVVVFDADG-HMYLERGRKQFVRAHDLRLGHLLVFSYDG--DAVLTVKVFD 101 44444..79***888888555..67777633335599*888876.567999******************988..4556999997 PP
2	B3	38.8	1.7e-12	158	230	14	86
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 + l +p +f e+hg+ k++ +++l+ +g W v+l+++k+ g+ +++ GW +F +n+Lk+gD++ F+ + MLOC_7649.1 158 QYLNVPLEFHEAHGYAKRS--KVVLR-MRGMDWAVNLKHNKRAGGktrSTFRYGWHQFLVDNRLKVGDICFFRALR 230 56889******999876..45555.599***9966655556699********************9543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.758	6	103	IPR003340	B3 DNA binding domain
CDD	cd10017	1.31E-12	7	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.6E-15	9	105	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.49E-15	9	105	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.8E-8	9	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-10	18	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.7E-23	137	254	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.013	143	254	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.068	145	254	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.73E-13	153	230	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.0E-10	159	230	IPR003340	B3 DNA binding domain
CDD	cd10017	3.98E-9	160	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDVLEVFEFF EIILENSFSS QRLPDKFAKL LDGREPREVK LREAGSGRGS LWDVVVVFDA 60 DGHMYLERGR KQFVRAHDLR LGHLLVFSYD GDAVLTVKVF DLSMCRRHYQ DDTSSGSSSD 120 SSSDSTSSRS AEMDVDDAPT SQFAVTLSVC HFLGKQQQYL NVPLEFHEAH GYAKRSKVVL 180 RMRGMDWAVN LKHNKRAGGK TRSTFRYGWH QFLVDNRLKV GDICFFRALR GNNAGRGGDD 240 GDDHELKVQV RKLDGSFVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_7649.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374007	0.0	AK374007.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3050O05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148431.1	1e-127	B3 domain-containing protein Os03g0212300-like
Swissprot	Q10Q26	1e-75	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	F2ECY2	1e-161	F2ECY2_HORVV; Predicted protein
STRING	MLOC_7649.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	1e-14	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]