PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7649.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 127aa    MW: 14465.4 Da    PI: 9.883
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7649.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-1326981486
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86
                 + l +p +f e+hg+ k++  +++l+  +g  W v+l+++k+ g+    +++ GW +F  +n+Lk+gD++ F+  +
  MLOC_7649.3 26 QYLNVPLEFHEAHGYAKRS--KVVLR-MRGMDWAVNLKHNKRAGGktrSTFRYGWHQFLVDNRLKVGDICFFRALR 98
                 56889********999876..45555.599*******9966655556699**********************9543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-245122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.06813122IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-142198IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-102698IPR003340B3 DNA binding domain
CDDcd100173.46E-1028100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDVDDAPTSQ FAVTLSVCHF LGKQQQYLNV PLEFHEAHGY AKRSKVVLRM RGMDWAVNLK  60
HNKRAGGKTR STFRYGWHQF LVDNRLKVGD ICFFRALRGN NAGRGGDDGD DHELKVQVRK  120
LDGSFVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7649.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3740070.0AK374007.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3050O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148431.11e-64B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q267e-44Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLF2ECY21e-88F2ECY2_HORVV; Predicted protein
STRINGMLOC_7649.21e-89(Hordeum vulgare)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]