PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76689.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 110aa    MW: 12578.4 Da    PI: 9.5655
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76689.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.2e-088342955
           AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55
                  ++++lg+++t+++Aa+a++ a++k++g
  MLOC_76689.3  8 ASVYLGSYDTEQKAARAYDVAALKYWG 34
                  789*******99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.154142IPR001471AP2/ERF domain
SMARTSM003803.8E-5448IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-11544IPR016177DNA-binding domain
CDDcd000188.83E-13644No hitNo description
Gene3DG3DSA:3.30.730.102.4E-11742IPR001471AP2/ERF domain
PfamPF008474.0E-5834IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVFQYGGASV YLGSYDTEQK AARAYDVAAL KYWGLNTKLN FSISEYEKEL ADIQDMSPEE  60
CVTYLRRRSS CFSRGASIYR GVTRWALLFI LFSLFKKAAF SSSKLPKTHM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76689.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529821e-123AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153211.11e-45AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_020174447.11e-45AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ1PFE11e-28AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN22e-28BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A446VN997e-53A0A446VN99_TRITD; Uncharacterized protein
STRINGTraes_6BL_340C2A897.15e-45(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.19e-31AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]