PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76996.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 157aa MW: 18166.2 Da PI: 10.9178

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76996.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.9	5.9e-12	2	67	35	91
FAR1 35 Cskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 C k+ k++++ k+ ++k++r+++ + tgC+ak++ +++ + w vt+++leHnH+l+p MLOC_76996.1 2 CWKKEKKKRQLKNqektgvpppeKVKRKRKNSIEITGCQAKMVATRK-GEIWLVTSIDLEHNHTLSP 67 66666666555556788999998899999***********99999.**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-10	2	67	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MCWKKEKKKR QLKNQEKTGV PPPEKVKRKR KNSIEITGCQ AKMVATRKGE IWLVTSIDLE 60 HNHTLSPPDE SKYLRSHKHT TEQEKLFIRT FNSVQMPTRK IMASLSYLRG GNAPYTKKYV 120 SNVRTAINRE NARAICYTCL STLGTSRKRI QLSNMLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	29	KKRQLKNQEKTGVPPPEKVKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76996.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174630.1	4e-44	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M0Z4P0	1e-113	M0Z4P0_HORVV; Uncharacterized protein
STRING	MLOC_76996.1	1e-114	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15170	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-10	FAR1-related sequence 5