PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77110.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 221aa    MW: 23886.2 Da    PI: 5.7145
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77110.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS80.33.4e-251132192109
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   + lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf++A+aarl++s+ ++++ ++ps++s  + s + aa+++f++v P+++ ++l+
  MLOC_77110.1 113 IALLMECAVAMSVGNLADANGTLLELSQMASPYApSCGERLVAYFARAMAARLMSSWVGVCAPVHPSSAS--SWSGVHAAFRAFYNVAPFVRCAYLA 207
                   689*******************************8889***********************999888887..477777899**************** PP

          GRAS  98 aNqaIleavege 109
                   +NqaIlea+ g+
  MLOC_77110.1 208 CNQAILEAFRGK 219
                   *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.24386221IPR005202Transcription factor GRAS
PfamPF035141.2E-22113219IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MINHLMSGRC SSVDMHDSSL GLIQFHDHHQ YMYGSSTGPF LPHHHGFISA EEDRCIGKVV  60
PELVEPATAG VAEEVEFGAC KEGEDVAVVG QERQEDAPKQ GEEEKEAHGV RMIALLMECA  120
VAMSVGNLAD ANGTLLELSQ MASPYAPSCG ERLVAYFARA MAARLMSSWV GVCAPVHPSS  180
ASSWSGVHAA FRAFYNVAPF VRCAYLACNQ AILEAFRGKR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-17932163124Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162129.11e-127protein SCARECROW-like
TrEMBLA0A287G3D71e-158A0A287G3D7_HORVV; Uncharacterized protein
STRINGMLOC_77110.11e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-19GRAS family protein