PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_77258.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WRKY

Protein Properties

Length: 340aa MW: 37279.1 Da PI: 10.3676

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_77258.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.2e-31	274	331	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ MLOC_77258.3 274 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 331 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-19	225	270	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.5E-34	260	331	IPR003657	WRKY domain
PROSITE profile	PS50811	30.297	267	333	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-27	270	331	IPR003657	WRKY domain
SMART	SM00774	2.6E-38	272	332	IPR003657	WRKY domain
Pfam	PF03106	2.4E-27	274	330	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEEVEEANRM AVESCHRVLG LLTQTQGPEQ LRSIALGTDE ACAKFRKVVS LLGNEPSGGT 60 THPRAKVVSR RQTPGFLSQK GFLDNNTPVV VLNSAHPSTS SAQVYPRNSI LDSQPAHPIG 120 GPPKLVQPLS AHFQFGDSSR YNQFQHQHQQ QQQKMRAEMF KRSNSGINLK FDSPSGTGTM 180 SSARSFMSSL SMDGSVASLD AKSSSFHLIG GPAMSDPVNA QQAPRRRCSG RGEDGNGKCA 240 ATGRCHCSKR RKLRVKRTIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS 300 VRGCPARKHV ERCVDDPSML IVTYEGEHNH TRMPTQSAQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	265	334	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_77258.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248640	0.0	AK248640.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169m16, mRNA sequence.
GenBank	AK354776	0.0	AK354776.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011A24.
GenBank	AK375802	0.0	AK375802.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3105H03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149329.1	0.0	protein WRKY1-like isoform X2
Swissprot	Q93WU6	6e-93	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	F2CT24	0.0	F2CT24_HORVV; Predicted protein
STRING	MLOC_77258.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-83	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]