PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_77258.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WRKY

Protein Properties

Length: 186aa MW: 20377.2 Da PI: 10.5639

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_77258.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.2e-32	120	177	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ MLOC_77258.4 120 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 177 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.4E-20	71	116	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-34	106	177	IPR003657	WRKY domain
PROSITE profile	PS50811	30.297	113	179	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-28	116	177	IPR003657	WRKY domain
SMART	SM00774	2.6E-38	118	178	IPR003657	WRKY domain
Pfam	PF03106	8.4E-28	120	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MRAEMFKRSN SGINLKFDSP SGTGTMSSAR SFMSSLSMDG SVASLDAKSS SFHLIGGPAM 60 SDPVNAQQAP RRRCSGRGED GNGKCAATGR CHCSKRRKLR VKRTIKVPAI SNKIADIPPD 120 EYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCV DDPSMLIVTY EGEHNHTRMP 180 TQSAQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	106	180	2	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_77258.4

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248640	0.0	AK248640.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169m16, mRNA sequence.
GenBank	AK354776	0.0	AK354776.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011A24.
GenBank	AK375802	0.0	AK375802.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3105H03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149329.1	1e-136	protein WRKY1-like isoform X2
Swissprot	O04336	7e-78	WRK21_ARATH; Probable WRKY transcription factor 21
Swissprot	Q93WU6	2e-78	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A3B6HXK0	1e-135	A0A3B6HXK0_WHEAT; Uncharacterized protein
TrEMBL	A0A446R6G7	1e-135	A0A446R6G7_TRITD; Uncharacterized protein
STRING	EMT24994	1e-135	(Aegilops tauschii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	6e-73	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]