PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77420.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 250aa    MW: 26579.8 Da    PI: 8.3289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77420.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16110158455
           AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    GVr ++ +g+++AeIrd + ng  +r++lg+f+t+  Aa a+++a+ + +g
  MLOC_77420.1 110 IGVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFDTPHAAALAYDQAAFSVRG 158
                   6******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.995108166IPR001471AP2/ERF domain
PRINTSPR003673.5E-7109120IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21109168IPR016177DNA-binding domain
PfamPF008473.0E-11110158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-27111166IPR001471AP2/ERF domain
CDDcd000185.36E-16111167No hitNo description
SMARTSM003802.2E-31111172IPR001471AP2/ERF domain
PRINTSPR003673.5E-7132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MELPAGDHSY YHGYSISFSS GTPQYTHHRR APQARARSDM EVDHQRLSFL MEATCITSND  60
YGSPPLQGTR PAPGDHSGGS EFMATPVAWL AVEAQGSSSG SCSAPESPLI GVRKRPWGKY  120
AAEIRDSTRN GARVWLGTFD TPHAAALAYD QAAFSVRGPA AVLNFPIKVV QESLRALGIG  180
GNAAAGDSPA LALKRRHCIR KRNPKNKRRT GTAATAATGV GAASALSTCV LELEDLGADY  240
LEELLTLSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-24102166872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178598.11e-101ethylene-responsive transcription factor ERF094-like
SwissprotA0A3Q7I5Y96e-41ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLM0Z5B90.0M0Z5B9_HORVV; Uncharacterized protein
STRINGMLOC_77420.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-40ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]