PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_77488.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 25660.7 Da PI: 6.937

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_77488.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k MLOC_77488.1 58 KKRRLTDEQVEGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 111 45689***********************************************99 PP
2	HD-ZIP_I/II	114.9	4.8e-37	58	147	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++eqv+ LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l MLOC_77488.1 58 KKRRLTDEQVEGLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERL 147 9**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.41E-17	52	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.131	53	113	IPR001356	Homeobox domain
SMART	SM00389	5.1E-17	56	117	IPR001356	Homeobox domain
CDD	cd00086	2.84E-16	58	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.8E-18	58	111	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-16	58	111	IPR001356	Homeobox domain
PRINTS	PR00031	1.2E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	93	109	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDKQHLFGCS YVDAPFFAAT GTAQGESRPR ARRRRRRAAR CGGGDGDGVE MDGGGDPKKR 60 RLTDEQVEGL ELSFREERKL ETGRKVHLAA ELGLDPKQVA VWFQNRRARH KSKLLEEEFS 120 KLKHAHDAAI LHKCHLENEV LRLKERLGAT EEEVRRLRSG AGSQAASGDG GDAAGAVGLC 180 GGSPSSSFST GTCQQHPGFS GADVLGPDDD LMMCVPEYGG YVDSSVVEWF SLYGLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	36	RPRARRRRRR
2	31	39	RRRRRRAAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_77488.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB490234	0.0	AB490234.1 Hordeum vulgare subsp. vulgare HvHox2 mRNA for homeodomain leucine zipper protein class 1, complete cds.
GenBank	AK368464	0.0	AK368464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2074A10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155462.1	1e-120	homeobox-leucine zipper protein HOX14-like
Swissprot	Q7XI85	6e-92	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A1Y0YPT7	1e-171	A0A1Y0YPT7_HORVV; Homeodomain leucine zipper protein class 1
TrEMBL	A0A1Y0YSL6	1e-171	A0A1Y0YSL6_HORVS; Homeodomain leucine zipper protein class 1
TrEMBL	D0VXY9	1e-171	D0VXY9_HORVV; Homeodomain leucine zipper protein class 1
STRING	MLOC_77488.1	1e-172	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-38	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]