PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77763.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 179aa    MW: 20164.8 Da    PI: 8.6906
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77763.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-112879155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+   e A +a+++a+ k +g
  MLOC_77763.1 28 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNeVEAASRAYDKAAIKCNG 79
                  89********.7******5553..2.26**********7889*********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-152888IPR016177DNA-binding domain
PfamPF008475.1E-72879IPR001471AP2/ERF domain
CDDcd000184.33E-252889No hitNo description
SMARTSM003801.3E-282993IPR001471AP2/ERF domain
PROSITE profilePS5103212.5892987IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-142987IPR001471AP2/ERF domain
PRINTSPR003671.0E-63041IPR001471AP2/ERF domain
PRINTSPR003671.0E-66989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKQMKGLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  60
NEVEAASRAY DKAAIKCNGR EAVTNFEPST YDAELLNEAA AEGADVDLNL SISQPTSQSP  120
KRDKSTLGLQ LHHGSYEGSE LKRPKASTND FCLSLKDCTP VQFHCWILYG YLIHYVTNN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5773681e-141AJ577368.1 Triticum aestivum partial mRNA for putative APETALA2 protein.
GenBankJX4020841e-141JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.12e-96floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC32e-85AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A287EN031e-127A0A287EN03_HORVV; Uncharacterized protein
STRINGEMT190641e-100(Aegilops tauschii)
STRINGMLOC_77763.71e-100(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.38e-56related to AP2.7