PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77763.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 178aa    MW: 20077.7 Da    PI: 8.6906
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77763.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-132878155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  MLOC_77763.4 28 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 78
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.33E-272888No hitNo description
PfamPF008471.2E-82878IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-172887IPR016177DNA-binding domain
PROSITE profilePS5103215.2772986IPR001471AP2/ERF domain
SMARTSM003801.9E-312992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-162986IPR001471AP2/ERF domain
PRINTSPR003671.0E-63041IPR001471AP2/ERF domain
PRINTSPR003671.0E-66888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKQMKGLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  60
NEVEAARAYD KAAIKCNGRE AVTNFEPSTY DAELLNEAAA EGADVDLNLS ISQPTSQSPK  120
RDKSTLGLQL HHGSYEGSEL KRPKASTNDF CLSLKDCTPV QFHCWILYGY LIHYVTNN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77763.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4020841e-148JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.11e-99floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC34e-87AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A287EN031e-130A0A287EN03_HORVV; Uncharacterized protein
STRINGEMT190641e-102(Aegilops tauschii)
STRINGMLOC_77763.71e-102(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-57related to AP2.7