PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77883.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 595aa    MW: 63818.8 Da    PI: 6.361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77883.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31300356259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+
  MLOC_77883.1 300 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPSCQVKKKVERSH-EGHVTEIIYKGTHNHP 356
                   8****************************************.***************8 PP
2WRKY104.65.3e-33530587259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  MLOC_77883.1 530 EDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 587
                   8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27294358IPR003657WRKY domain
SuperFamilySSF1182903.01E-25294358IPR003657WRKY domain
PROSITE profilePS5081122.63294358IPR003657WRKY domain
SMARTSM007743.1E-33299357IPR003657WRKY domain
PfamPF031061.3E-23300356IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-37514589IPR003657WRKY domain
SuperFamilySSF1182901.05E-28521589IPR003657WRKY domain
PROSITE profilePS5081137.195524589IPR003657WRKY domain
SMARTSM007747.1E-38529588IPR003657WRKY domain
PfamPF031063.2E-25530587IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDGHTHIAME WKDQSARPDC SMLPSFLTDP FPADPLVEDC DGNNDGSEGA GFERHGLSVD  60
VGSPQEEGKP MPATPHFGQR SSSSSSLSER MQARAGFSVA KLSMPDSEYS GAQSPYLTIP  120
PGLSPASLLE SPVFLSNAMG QASPTTGKLL MLGDTNNNNN GRLEPPSIED RPGAFSFKPL  180
DLKSSQYTAE GKKGSLHNSQ HPSAPSRDVP VKTETNIQTT TRGANPLGYL NQAQFNNAQD  240
PMKRSYHDCN NKRNRLAADS TAAGGDNNAS PPDNSLPAAD SEAAKVGDYP AAVATAAPAE  300
DGYSWRKYGQ KQVKHSEYPR SYYKCTHPSC QVKKKVERSH EGHVTEIIYK GTHNHPRPAA  360
QGRRPAGGAQ VHPFNDAQMD APADNNNNGG YGNAGGSQPN VEARSLWHGG VAVQDWRGDG  420
LEATSSPSVP GELCDSSASM QVHDGAARFE SPEGGVDVTS AVSDEVDGDD RVAHGSMSQG  480
QGAADTTEGD ELESKRRKLE SCAIDMSTAS RAVREPRVVI QTTSEVDILE DGYRWRKYGQ  540
KVVKGNPNPR SYYKCTHPGC SVRKHVERAS HDLKSVITTY EGKHNHEVPA ARNGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36300590878Probable WRKY transcription factor 4
2lex_A6e-36300590878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767650.0AK376765.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189258.10.0probable WRKY transcription factor 34
TrEMBLA0A287DVW10.0A0A287DVW1_HORVV; Uncharacterized protein
STRINGMLOC_77883.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-106WRKY DNA-binding protein 2