PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77883.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 214aa    MW: 23455.7 Da    PI: 9.5928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77883.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31150206259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+
  MLOC_77883.4 150 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPSCQVKKKVERSH-EGHVTEIIYKGTHNHP 206
                   8****************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28144208IPR003657WRKY domain
PROSITE profilePS5081122.63144208IPR003657WRKY domain
SuperFamilySSF1182905.62E-26144208IPR003657WRKY domain
SMARTSM007743.1E-33149207IPR003657WRKY domain
PfamPF031062.6E-24150206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLGDTNNNNN GRLEPPSIED RPGAFSFKPL DLKSSQYTAE GKKGSLHNSQ HPSAPSRDVP  60
VKTETNIQTT TRGANPLGYL NQAQFNNAQD PMKRSYHDCN NKRNRLAADS TAAGGDNNAS  120
PPDNSLPAAD SEAAKVGDYP AAVATAAPAE DGYSWRKYGQ KQVKHSEYPR SYYKCTHPSC  180
QVKKKVERSH EGHVTEIIYK GTHNHPRPAA QGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-161492081474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77883.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767650.0AK376765.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189258.11e-120probable WRKY transcription factor 34
TrEMBLA0A287DVX01e-155A0A287DVX0_HORVV; Uncharacterized protein
TrEMBLA0A287DVX31e-156A0A287DVX3_HORVV; Uncharacterized protein
STRINGMLOC_77883.11e-146(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-30WRKY DNA-binding protein 2