PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77955.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 198aa    MW: 21518.2 Da    PI: 9.0481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77955.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-183286256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  rk+ +++keq   Le+ F+++++++++++  LAk+l+L  rqV vWFqNrRa+ k
  MLOC_77955.2 32 RKKLRLSKEQAAFLEDSFKEHSTLNTKQKVALAKQLNLLPRQVEVWFQNRRARTK 86
                  788899***********************************************98 PP
2HD-ZIP_I/II125.32.8e-4032122192
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   +kk+rlskeq+++LE+sF+e+++L++++Kv+la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  MLOC_77955.2  32 RKKLRLSKEQAAFLEDSFKEHSTLNTKQKVALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 122
                   69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-181682IPR009057Homeodomain-like
SuperFamilySSF466894.05E-181989IPR009057Homeodomain-like
PROSITE profilePS5007116.8112888IPR001356Homeobox domain
SMARTSM003892.0E-153092IPR001356Homeobox domain
PfamPF000461.1E-153286IPR001356Homeobox domain
CDDcd000866.98E-163289No hitNo description
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
SMARTSM003402.5E-2488131IPR003106Leucine zipper, homeobox-associated
PfamPF021836.1E-1188122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDFSAQGDRD AAPAGGGGGS RGSDEDDGGS ARKKLRLSKE QAAFLEDSFK EHSTLNTKQK  60
VALAKQLNLL PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELAELRA  120
LKSVHPFYMH LPATTLSMCP SCERVASNSA PAPSPAGIAA APEQQHRPSS FAALFSSARS  180
FPLASSPSQA PMPAPSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77955.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-162BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-162KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148543.11e-100homeobox-leucine zipper protein HOX11-like
SwissprotA2Z1U12e-89HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE27e-89HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLM0Z6P91e-142M0Z6P9_HORVV; Uncharacterized protein
STRINGMLOC_77955.21e-143(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-69homeobox from Arabidopsis thaliana