PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77955.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 154aa    MW: 17129.8 Da    PI: 10.2738
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77955.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.48.6e-1214422856
                  HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                  +++  LAk+l+L  rqV vWFqNrRa+ k
  MLOC_77955.4 14 KQKVALAKQLNLLPRQVEVWFQNRRARTK 42
                  67889**********************98 PP
2HD-ZIP_I/II911.4e-2914782792
   HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                  ++Kv+la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  MLOC_77955.4 14 KQKVALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 78
                  89***********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.27E-81345No hitNo description
Gene3DG3DSA:1.10.10.601.5E-101447IPR009057Homeodomain-like
PfamPF000465.5E-91442IPR001356Homeobox domain
PROSITE profilePS5007111.9531444IPR001356Homeobox domain
SuperFamilySSF466896.42E-101453IPR009057Homeodomain-like
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
SMARTSM003402.5E-244487IPR003106Leucine zipper, homeobox-associated
PfamPF021834.0E-114478IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
VRSIVSFLPP WLQKQKVALA KQLNLLPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL  60
TEENRRLQKE LAELRALKSV HPFYMHLPAT TLSMCPSCER VASNSAPAPS PAGIAAAPEQ  120
QHRPSSFAAL FSSARSFPLA SSPSQAPMPA PSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77955.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-120BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-120KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576587.11e-68homeobox-leucine zipper protein HOX11
SwissprotA2Z1U15e-64HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-63HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLM0Z6P97e-97M0Z6P9_HORVV; Uncharacterized protein
STRINGMLOC_77955.21e-97(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-52homeobox from Arabidopsis thaliana