PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78149.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 589aa    MW: 62847.3 Da    PI: 6.2022
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78149.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-083583951954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +e+  LA++ gL+  qV++WF N R +
  MLOC_78149.1 358 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 395
                   554459******************************88 PP
2BELL113.79.9e-37220291172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  MLOC_78149.1 220 ERQDLQNKVTALMAMLDQVDRRYRHYHQQMQMVVSSFDAVAGSGAARPYTALALQTISRHFRSLRDAIGAQV 291
                   799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-52152289IPR006563POX domain
PfamPF075261.5E-48158287IPR006563POX domain
PROSITE profilePS5007111.839336399IPR001356Homeobox domain
SMARTSM003896.2E-8339403IPR001356Homeobox domain
CDDcd000863.09E-11339400No hitNo description
SuperFamilySSF466892.99E-16340406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26342405IPR009057Homeodomain-like
PfamPF059202.6E-16356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MATFFSASND QRGLAGGGGG GADMSFHHHY PMSNQYPDSS TGGLIPLPAS IVQQSHIAHG  60
GGGDGGDDEQ AAFMNSRDGA EIGGLQTQML MGDGGASAGQ RSHQGGLSLS LGSQVPVSLY  120
QYGRPGGMTA AASPSLMSPN QSAMAMAASR NAQVNVYVQN SRFLKAAREL LDEVVSVRDA  180
IKRKGDRKDD SAGNGECGKV EGDKGDENEG SSTAELSPAE RQDLQNKVTA LMAMLDQVDR  240
RYRHYHQQMQ MVVSSFDAVA GSGAARPYTA LALQTISRHF RSLRDAIGAQ VQSARRSLGE  300
PQDGSGAGGL SRLRYIDQHL RQQRAMQQFG MMQQPQHAWR PQRGLPESAV SVLRAWLFEH  360
FLHPYPKDSE KVMLARQAGL SRGQVSNWFI NARVRLWKPM VEEMYKEEFG AEMDSTNSSS  420
ENAGNNKHGK VDEAACSEDQ DRDEFQSTSA HAGASQLLIA YKSEPVASMD AGPLSSLGGG  480
DMGTTYAPGG LSLNHHGPGG GSLLQDAFAH HGDDARFVGY GGNMGDLGGS VSLTLGLQHC  540
NNNSNAGHVP PEQQGLLYGN PGDFDFLNGA DDRQRFASSS SQLLHDFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-16345403159Homeobox protein Meis2
5bng_B1e-16345403159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675790.0AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165933.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-115BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLF2DUL10.0F2DUL1_HORVV; Predicted protein
STRINGMLOC_78149.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-117BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]