PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78196.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 179aa    MW: 20092.1 Da    PI: 12.029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78196.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-0591112323
                   ETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                   C  Cg++F+ ++ L rH  t H
  MLOC_78196.1  91 CRVCGRRFRARDALLRHFDTiH 112
                   9****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.03289117IPR007087Zinc finger, C2H2
SuperFamilySSF576676.63E-590114No hitNo description
PROSITE patternPS00028091112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSRPLYNLRR RLLPSRSHRL STTSSTPATP VAVLWDLAAS RPPSKLPLYD SAVRLHLAAS  60
SFGRLRFSAA FLHPCHRLPA PDPSADATNL CRVCGRRFRA RDALLRHFDT IHTREHAKRL  120
ERIESSRGDR RVRLAASLSL KLSKYSKAAR ELTAGVNPGS PADELRRARV HAELSRYPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164485.11e-111uncharacterized protein LOC109749961
TrEMBLA0A1D5USV81e-111A0A1D5USV8_WHEAT; Uncharacterized protein
STRINGMLOC_78196.11e-121(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.17e-15C2H2 family protein